The New Microbiological Technology Wave

In an excerpt from an important new book, Pfizer's Claudio Denoya looks at alternative microbiological methods, and their connection with process analytical technology (PAT).

By Claudio D.Denoya, Ph.D., Research Fellow and Team Leader, Pfizer Global R&D

1 of 2 < 1 | 2 View on one page

Claudio Denoya Pfizer

Editor’s Note:
The following excerpt is republished from: Saghee, M.R., Sandle, T. and Tidswell, E.C. (Eds.) (2010): Microbiology and Sterility Assurance in Pharmaceuticals and Medical Devices, New Delhi: Business Horizons. Further circulation is prohibited. The book may be purchased at

Recently, a myriad of new analytical methods have emerged through the application of technological advances in molecular biology, chemistry and biochemistry, immunology and immunochemistry, nanotechnology, and electronics and computer-aided imaging. New technical platforms appropriate for the detection, enumeration and identification of microorganisms have been recently developed and numerous options exist already in the market. These new devices and reagents, which are collectively known as Alternative or Rapid Microbiological Methods (ARMM), can be applied to the microbiological quality control in industries such as the pharmaceutical, food, cosmetics, and clinical diagnostics among others.

The new detection technologies, in many cases, require fewer microbial cells to obtain results in significantly shorter time than those obtained through the use of traditional methods. In addition, some of the technologies offer more accurate and informative data related to the potential contaminant that the information obtained using the conventional assays. Some of these platforms are also semi-automated or fully automated at least on some steps of the sample manipulation, offering improved throughput and precision.

These methods may be applied to the microbiological quality control in pharmaceutical active ingredients, intermediate and final products, excipients and other raw materials, equipment, personnel, and manufacturing facilities.

To begin to review these technologies it is important to note that there are three general areas of measurement pertaining to the pharmaceutical microbiological sciences [1]. Measurements can be qualitative, that is, determining if contaminants are either present or absent in a test sample. Measurements can be quantitative, that is to precisely determine the number of organisms present in a test sample. Finally, there are measurements derived from technologies designed to specifically identify the microorganism associated with contamination.

The range of technologies that are available is broad and those interested in developing a technology to suit a particular application or need should apply an analytical approach in the evaluation of a proposed technology. Fung considers ten attributes that should be included in any review of proposed technology [2]. These are, (1) accuracy for the intended purpose, (2) speed in productivity, (3) cost, (4) acceptability by the scientific community and (5) regulatory agencies, (6) simplicity of operation, including training requirements, and reagents, (7) the reputation of the vendor, (8) technical services provided by the vendor, and finally, (9) utility and (10) space requirements.

Detection platforms for alternative microbiological methods have been generally classified as based on detection by growth, viability, and/or cellular component.

ARMMs and the Pharmaceutical Industry

General acceptance of alternative microbiological methods (AMM), which also include the new rapid microbiological methods (RMM) is approximately 10-15 years behind process analytical technology (PAT). PAT now is broadly viewed to include chemical, physical, microbiological, mathematical and risk analysis. PAT applications developed to monitor chemical reactions, usually employ probes placed in-line or at-line and report results in real time (instantaneously). On-line analyses improve worker safety (samples are never isolated), business efficiency (immediate results), leading to nimble process control. PAT has additional advantages when reaction monitoring is needed for unstable intermediates, or when reaction temperatures are extreme (cryogenic or elevated).

ARMM generally are much quicker than the traditional methods, but cannot provide data as quickly as most PAT methods. AMM also may be automatable, easier, exhibit better accuracy, and have higher throughput. Classical microbial tests require extended periods of incubation to allow the growth of microorganisms. The cultivation of microorganisms present in pharmaceutical ingredients, intermediates, products and manufacturing environments usually require a long recovery phase before initiating a frank growth where cells are actively dividing. In addition, most microorganisms isolated from pharmaceutical samples are initially stressed, and the time for the microbial detection and enumeration typically ranges from 2 to more than 14 days of incubation.

The technologies available to augment detection, quantitation, isolation, and identification of microorganisms have gained momentum in recent years. These advances have been particularly notable in areas outside the realm of the pharmaceutical microbiologist emerging from disciplines such as clinical diagnostics, food microbiology, and bio-defense. Since AMM have been embraced to a much greater extent outside of the pharmaceutical industry [3], scientific or technological hurdles are not the main barriers. Regulatory and economic concerns have been cited as main reasons for the delayed adoption of AMM in the pharmaceutical industry. The initial cost to purchase these instruments can be quite high and validation is expensive and time consuming. The pharmaceutical industry generally is risk-adverse when regulatory approval is at stake. Inclusion of an AMM as part of an initial NDA has the risk of delaying preliminary approval.

1 of 2 < 1 | 2 View on one page
Show Comments
Hide Comments

Join the discussion

We welcome your thoughtful comments.
All comments will display your user name.

Want to participate in the discussion?

Register for free

Log in for complete access.


No one has commented on this page yet.

RSS feed for comments on this page | RSS feed for all comments